API Reference

QC pipeline

calculate_qc(adata[, flags, extra_flags, ...])	Calculate quality control (QC) metrics for an AnnData object.
generate_qc_clusters(ad, metrics[, aux_ad, ...])	Generate quality control (QC) clusters for an AnnData object.
cellwise_qc(adata[, metrics, cell_qc_key])	Filter cells in an AnnData object based on quality control metrics.
clusterwise_qc(ad[, threshold, cell_qc_key, ...])	Find good quality control (QC) clusters in an AnnData object.

fit_gaussian(x[, n_components, threshold, ...])

Fit a Gaussian mixture model to a 1D numpy array.